ICGC Data Portal
It contains the gene profile
NIH resources
In NIH, some good resources that about:
If you have time, then it’s a good place to go through some basic concepts and workflow. The good point it that, it has the command line to tell you how to use the software.
How to install illumina bcl-convert software in Ubuntu
illumina has bcl-convert packages for centos. We have ubuntu OS. thus there is the solution to use the centos package in ubuntu.
rpm2cpio ./bcl-convert-3.9.3-2.el7.x86_64.rpm | cpio -idmv
- resource description for dbsnp and clinvar
- dbsnp resourec donwload
- clinvar resource donwload
对VCF的详细解释说明
生物星球
这里面的文章很不错，介绍了生物信息的相关知识，可以作为基因测序的知识入门。
生物星球-solid tumor 介绍
FDA drugs
This website contain the FDA drugs and biomarkers
PharmGKB website
This website contain detailed information about drug labeling. Need to read the infor in detail
How to define the Tier Level
Clinical Annotation Levels of Evidence